If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ), 'gf_id' => 'HOM05D000818', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000818' ), 'data_identifier' => 'HOM05D000818', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000818', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p19220' => 'bna', 'A03p24960' => 'bna', 'A04p01690' => 'bna', 'A06p01880' => 'bna', 'A06p36300' => 'bna', 'A09p44340' => 'bna', 'A09p52560' => 'bna', 'Aa31LG10G2590' => 'aar', 'Aa31LG10G6670' => 'aar', 'Aa31LG11G4670' => 'aar', 'Aa31LG1G26380' => 'aar', 'Aa31LG4G19290' => 'aar', 'Actinidia01806' => 'ach', 'Actinidia08980' => 'ach', 'Actinidia10553' => 'ach', 'Actinidia12145' => 'ach', 'Actinidia13305' => 'ach', 'Actinidia13306' => 'ach', 'Actinidia24752' => 'ach', 'Actinidia24753' => 'ach', 'Actinidia24754' => 'ach', 'Actinidia28715' => 'ach', 'Actinidia31392' => 'ach', 'Actinidia31393' => 'ach', 'Actinidia32501' => 'ach', 'Actinidia32751' => 'ach', 'Actinidia39599' => 'ach', 'Ah.01g005380' => 'amhyb', 'Ah.01g005400' => 'amhyb', 'Ah.03g149100' => 'amhyb', 'Ah.05g177850' => 'amhyb', 'Ah.10g035430' => 'amhyb', 'Ah.14g086220' => 'amhyb', 'AL1G10120' => 'aly', 'AL1G60490' => 'aly', 'AL4G30660' => 'aly', 'AL4G43920' => 'aly', 'AL5G31710' => 'aly', 'AL5G42540' => 'aly', 'AL6G37430' => 'aly', 'Aqoxy4G00027' => 'aox', 'Aqoxy6G02199' => 'aox', 'Aqoxy7G00863' => 'aox', 'Aqoxy7G01690' => 'aox', 'Aqoxy7G03803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.27NEX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2CP92U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4BR0CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68Y3DI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BD3DHQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BEDW22' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C78YHL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D73BWA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FVJ9QC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JVI4W7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KP642K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TH0YQP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U024VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC8C9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YKY5YL' => 'arhy', 'AT1G02110' => 'ath', 'AT1G52320' => 'ath', 'AT2G34670' => 'ath', 'AT3G51290' => 'ath', 'AT3G60320' => 'ath', 'AT5G25590' => 'ath', 'ATR0057G102' => 'atr', 'ATR0564G462' => 'atr', 'ATR0712G148' => 'atr', 'ATR1098G073' => 'atr', 'Atru.chr1.3279' => 'acertr', 'Atru.chr10.915' => 'acertr', 'Atru.chr10.932' => 'acertr', 'Atru.chr3.851' => 'acertr', 'Atru.chr5.128' => 'acertr', 'Atru.chr5.129' => 'acertr', 'Atru.chr7.2297' => 'acertr', 'AUR62003341' => 'cqu', 'AUR62009358' => 'cqu', 'AUR62013745' => 'cqu', 'AUR62016448' => 'cqu', 'AUR62023040' => 'cqu', 'AUR62023406' => 'cqu', 'AUR62029496' => 'cqu', 'AUR62033041' => 'cqu', 'AUR62042761' => 'cqu', 'AUR62042924' => 'cqu', 'AUR62044342' => 'cqu', 'BcaB01g00533' => 'bca', 'BcaB01g00534' => 'bca', 'BcaB02g08176' => 'bca', 'BcaB04g19785' => 'bca', 'BcaC01g05785' => 'bca', 'BcaC02g10147' => 'bca', 'BcaC08g43409' => 'bca', 'BcaNung03932' => 'bca', 'BcaNung04846' => 'bca', 'BolC3t14625H' => 'bol', 'BolC3t15323H' => 'bol', 'BolC4t24782H' => 'bol', 'BolC6t35862H' => 'bol', 'BolC7t44752H' => 'bol', 'BolC8t50270H' => 'bol', 'BolC8t51125H' => 'bol', 'BolC9t53600H' => 'bol', 'BraA03t11177Z' => 'bra', 'BraA03t11699Z' => 'bra', 'BraA04t15893Z' => 'bra', 'BraA06t23405Z' => 'bra', 'BraA06t26551Z' => 'bra', 'BraA09t39895Z' => 'bra', 'BraA09t40687Z' => 'bra', 'C03p22420' => 'bna', 'C03p29730' => 'bna', 'C04p32320' => 'bna', 'C06p07760' => 'bna', 'C07p42240' => 'bna', 'C07p42250' => 'bna', 'C08p26570' => 'bna', 'C08p35320' => 'bna', 'C09p06790' => 'bna', 'CAN.G1274.28' => 'can', 'CAN.G1473.11' => 'can', 'CAN.G438.71' => 'can', 'CAN.G886.3' => 'can', 'CANSAT21G0338' => 'cansat', 'CANSAT21G2497' => 'cansat', 'CANSAT25G1900' => 'cansat', 'CANSAT25G2656' => 'cansat', 'CANSAT25G3502' => 'cansat', 'CANSAT35G0982' => 'cansat', 'CANSAT54G0538' => 'cansat', 'CANSAT56G0748' => 'cansat', 'CANSAT78G1385' => 'cansat', 'CARHR000220' => 'chi', 'CARHR042440' => 'chi', 'CARHR053130' => 'chi', 'CARHR128790' => 'chi', 'CARHR140060' => 'chi', 'CARHR140070' => 'chi', 'CARHR140080' => 'chi', 'CARHR160870' => 'chi', 'CARHR170640' => 'chi', 'CARHR187780' => 'chi', 'Carub.0001s0011' => 'cru', 'Carub.0001s4129' => 'cru', 'Carub.0004s1636' => 'cru', 'Carub.0004s2741' => 'cru', 'Carub.0005s1766' => 'cru', 'Carub.0005s2707' => 'cru', 'Carub.0006s2346' => 'cru', 'Ca_01119_v3' => 'car', 'Ca_02519_v3' => 'car', 'Ca_04831_v3' => 'car', 'Ca_08069_v3' => 'car', 'Ca_11690_v3' => 'car', 'Ca_15625_v3' => 'car', 'Ca_16016_v3' => 'car', 'Ca_24918_v3' => 'car', 'Ca_25806_v3' => 'car', 'Cc00_g11240' => 'ccan', 'Cc02_g25100' => 'ccan', 'Cc04_g03380' => 'ccan', 'Cc07_g11030' => 'ccan', 'Cc08_g08510' => 'ccan', 'CDE01G0556' => 'cde', 'CDE02G1168' => 'cde', 'CDE02G1597' => 'cde', 'CDE02G1793' => 'cde', 'CDE04G0810' => 'cde', 'CDE04G3289' => 'cde', 'CDE05G1017' => 'cde', 'CDE05G2059' => 'cde', 'CDE05G2244' => 'cde', 'CDE05G3409' => 'cde', 'CDE09G1039' => 'cde', 'CDE11G0046' => 'cde', 'CDE11G1168' => 'cde', 'Cfa002074' => 'cfa', 'Cfa006998' => 'cfa', 'Cfa011073' => 'cfa', 'Cfa012660' => 'cfa', 'Cfa012661' => 'cfa', 'Cfa013334' => 'cfa', 'Ciclev10007564m.g' => 'ccl', 'Ciclev10014533m.g' => 'ccl', 'Ciclev10018930m.g' => 'ccl', 'Ciclev10024988m.g' => 'ccl', 'Ciclev10025182m.g' => 'ccl', 'CiPaw.01G238700' => 'cil', 'CiPaw.02G150800' => 'cil', 'CiPaw.07G060800' => 'cil', 'CiPaw.07G208300' => 'cil', 'CiPaw.08G022700' => 'cil', 'CiPaw.08G130300' => 'cil', 'CiPaw.09G117000' => 'cil', 'CiPaw.13G026400' => 'cil', 'CiPaw.14G020700' => 'cil', 'ClCG01G020450' => 'cla', 'ClCG03G006360' => 'cla', 'ClCG06G002500' => 'cla', 'ClCG07G013050' => 'cla', 'ClCG07G013060' => 'cla', 'ClCG09G002110' => 'cla', 'COL.COLO4_12411' => 'col', 'COL.COLO4_17677' => 'col', 'COL.COLO4_18708' => 'col', 'COL.COLO4_22458' => 'col', 'COL.COLO4_30387' => 'col', 'Cpa.g.sc17.76' => 'cpa', 'Cpa.g.sc205.6' => 'cpa', 'Cpa.g.sc410.2' => 'cpa', 'Cpa.g.sc6.283' => 'cpa', 'Cpa.g.sc68.11' => 'cpa', 'CsaV3_1G037440' => 'csa', 'CsaV3_3G025110' => 'csa', 'CsaV3_3G025120' => 'csa', 'CsaV3_6G008620' => 'csa', 'CsaV3_6G047330' => 'csa', 'CsaV3_7G033190' => 'csa', 'CSS0009022' => 'camsi', 'CSS0009534' => 'camsi', 'CSS0019094' => 'camsi', 'CSS0027266' => 'camsi', 'CSS0032626' => 'camsi', 'CSS0039590' => 'camsi', 'CSS0040120' => 'camsi', 'CSS0042993' => 'camsi', 'CSS0043040' => 'camsi', 'CSS0045830' => 'camsi', 'CSS0047012' => 'camsi', 'DCAR_003870' => 'dca', 'DCAR_007561' => 'dca', 'DCAR_007698' => 'dca', 'DCAR_014036' => 'dca', 'DCAR_023054' => 'dca', 'DCAR_029467' => 'dca', 'Dinv06984' => 'din', 'Dinv16244' => 'din', 'Dinv30244' => 'din', 'Dinv32191' => 'din', 'Dinv32192' => 'din', 'Dinv33652' => 'din', 'Dinv38043' => 'din', 'Dinv40114' => 'din', 'Dinv43618' => 'din', 'Dinv44064' => 'din', 'Duzib052G0403' => 'dzi', 'Duzib132G1135' => 'dzi', 'Duzib133G0528' => 'dzi', 'Duzib138G0248' => 'dzi', 'Duzib147G1443' => 'dzi', 'Duzib150G1012' => 'dzi', 'Duzib160G0170' => 'dzi', 'Duzib168G2068' => 'dzi', 'Duzib187G1191' => 'dzi', 'Duzib187G1541' => 'dzi', 'Duzib235G1411' => 'dzi', 'Duzib264G1309' => 'dzi', 'ECA232G2709' => 'eca', 'ECA233G3323' => 'eca', 'ECA234G2388' => 'eca', 'ECA234G3360' => 'eca', 'ECA238G3985' => 'eca', 'ECA247G0064' => 'eca', 'EL10Ac1g00760' => 'bvu', 'EL10Ac2g04093' => 'bvu', 'EL10Ac6g15526' => 'bvu', 'EL10Ac8g19594' => 'bvu', 'EL10Ac9g22005' => 'bvu', 'Eucgr.C02885' => 'egr', 'Eucgr.D01227' => 'egr', 'Eucgr.E02479' => 'egr', 'Eucgr.J02464' => 'egr', 'Eucgr.J02988' => 'egr', 'FAN01G1404' => 'fan', 'FAN02G0788' => 'fan', 'FAN03G2811' => 'fan', 'FAN05G0767' => 'fan', 'FAN06G1514' => 'fan', 'FAN06G5101' => 'fan', 'FAN09G0625' => 'fan', 'FAN10G0853' => 'fan', 'FAN10G3602' => 'fan', 'FAN11G3883' => 'fan', 'FAN14G5286' => 'fan', 'FAN15G3121' => 'fan', 'FAN16G1034' => 'fan', 'FAN19G1188' => 'fan', 'FAN20G0675' => 'fan', 'FAN21G3116' => 'fan', 'FAN23G2076' => 'fan', 'FAN26G3190' => 'fan', 'FAN27G3404' => 'fan', 'FAN28G1188' => 'fan', 'FvH4_1g11480' => 'fve', 'FvH4_2g36270' => 'fve', 'FvH4_3g09830' => 'fve', 'FvH4_6g31260' => 'fve', 'FvH4_7g10170' => 'fve', 'Glyma.01G164500' => 'gma', 'Glyma.03G111300' => 'gma', 'Glyma.04G079400' => 'gma', 'Glyma.06G080900' => 'gma', 'Glyma.09G085000' => 'gma', 'Glyma.09G242800' => 'gma', 'Glyma.11G078500' => 'gma', 'Glyma.13G359000' => 'gma', 'Glyma.15G014800' => 'gma', 'Glyma.15G193200' => 'gma', 'Glyma.16G124600' => 'gma', 'Glyma.18G251900' => 'gma', 'Gohir.1Z049486' => 'ghi', 'Gohir.A01G128200' => 'ghi', 'Gohir.A02G086901' => 'ghi', 'Gohir.A02G121200' => 'ghi', 'Gohir.A02G172200' => 'ghi', 'Gohir.A03G216600' => 'ghi', 'Gohir.A05G049000' => 'ghi', 'Gohir.A06G138200' => 'ghi', 'Gohir.A08G058500' => 'ghi', 'Gohir.A08G138400' => 'ghi', 'Gohir.A11G042500' => 'ghi', 'Gohir.A11G075400' => 'ghi', 'Gohir.D01G116500' => 'ghi', 'Gohir.D02G238200' => 'ghi', 'Gohir.D03G007900' => 'ghi', 'Gohir.D03G063600' => 'ghi', 'Gohir.D05G050900' => 'ghi', 'Gohir.D06G094700' => 'ghi', 'Gohir.D08G067600' => 'ghi', 'Gohir.D08G159700' => 'ghi', 'Gohir.D11G046000' => 'ghi', 'Gohir.D11G080100' => 'ghi', 'Gorai.002G059600' => 'gra', 'Gorai.002G142000' => 'gra', 'Gorai.003G008100' => 'gra', 'Gorai.004G070400' => 'gra', 'Gorai.004G165900' => 'gra', 'Gorai.005G266700' => 'gra', 'Gorai.007G049300' => 'gra', 'Gorai.007G085700' => 'gra', 'Gorai.009G052500' => 'gra', 'Gorai.010G109200' => 'gra', 'GSVIVG01017101001' => 'vvi', 'GSVIVG01018276001' => 'vvi', 'GSVIVG01018739001' => 'vvi', 'GSVIVG01021596001' => 'vvi', 'GSVIVG01035712001' => 'vvi', 'GSVIVG01037480001' => 'vvi', 'HanXRQChr02g0032771' => 'han', 'HanXRQChr02g0032781' => 'han', 'HanXRQChr02g0032791' => 'han', 'HanXRQChr10g0313361' => 'han', 'HanXRQChr11g0337391' => 'han', 'HanXRQChr13g0414601' => 'han', 'HanXRQChr14g0441791' => 'han', 'HanXRQChr16g0521311' => 'han', 'HanXRQChr17g0562501' => 'han', 'Haze_02844' => 'cav', 'Haze_03734' => 'cav', 'Haze_05747' => 'cav', 'Haze_16410' => 'cav', 'Haze_21825' => 'cav', 'Hma1.2p1_0003F.1_g003490' => 'hma', 'Hma1.2p1_0092F.1_g046680' => 'hma', 'Hma1.2p1_1418F.1_g282300' => 'hma', 'Hma1.2p1_1418F.1_g282310' => 'hma', 'Hma1.2p1_2285F.1_g318920' => 'hma', 'Hma1.2p1_3353F.1_g335510' => 'hma', 'HPP92_004935' => 'vpl', 'HPP92_017185' => 'vpl', 'HPP92_017186' => 'vpl', 'HPP92_017188' => 'vpl', 'HPP92_020676' => 'vpl', 'HPP92_025283' => 'vpl', 'HPP92_027328' => 'vpl', 'HPP92_027345' => 'vpl', 'Hund00620' => 'sun', 'Hund14061' => 'sun', 'Hund16501' => 'sun', 'Hund17087' => 'sun', 'Lalb_Chr01g0012701' => 'lal', 'Lalb_Chr01g0012711' => 'lal', 'Lalb_Chr03g0040381' => 'lal', 'Lalb_Chr05g0212281' => 'lal', 'Lalb_Chr08g0233211' => 'lal', 'Lalb_Chr08g0243351' => 'lal', 'Lalb_Chr09g0321621' => 'lal', 'Lalb_Chr13g0290601' => 'lal', 'Lalb_Chr14g0373381' => 'lal', 'Lalb_Chr16g0377441' => 'lal', 'Lalb_Chr20g0116891' => 'lal', 'Lalb_Chr25g0279771' => 'lal', 'Lj1A1164G82' => 'lonja', 'Lj1g0003727' => 'lja', 'Lj1g0009974' => 'lja', 'Lj1g0016313' => 'lja', 'Lj2C480G5' => 'lonja', 'Lj2C480T4' => 'lonja', 'Lj2g0011602' => 'lja', 'Lj3g0002239' => 'lja', 'Lj3g0009449' => 'lja', 'Lj3g0019294' => 'lja', 'Lj5A60T65' => 'lonja', 'Lj6g0017584' => 'lja', 'Lj7C709T5' => 'lonja', 'Lj9A508G61' => 'lonja', 'Lj9A557G32' => 'lonja', 'Lj9C508T9' => 'lonja', 'Lsat_1_v5_gn_1_35101' => 'lsa', 'Lsat_1_v5_gn_2_75801' => 'lsa', 'Lsat_1_v5_gn_4_145681' => 'lsa', 'Lsat_1_v5_gn_4_39741' => 'lsa', 'Lsat_1_v5_gn_5_130261' => 'lsa', 'Lsat_1_v5_gn_6_11220' => 'lsa', 'Manes.01G147200' => 'mes', 'Manes.02G105700' => 'mes', 'Manes.03G065580' => 'mes', 'Manes.05G054700' => 'mes', 'Manes.06G060700' => 'mes', 'Manes.11G046700' => 'mes', 'Manes.14G134700' => 'mes', 'Manes.16G066700' => 'mes', 'Mapoly0005s0106' => 'mpo', 'MBI04_g33723_MAGBIO' => 'mbi', 'MBI04_g46825_MAGBIO' => 'mbi', 'MBI09_g03718_MAGBIO' => 'mbi', 'MBI13_g08645_MAGBIO' => 'mbi', 'MBI16_g18655_MAGBIO' => 'mbi', 'MBI19_g04240_MAGBIO' => 'mbi', 'MD02G1212400' => 'mdo', 'MD05G1275400' => 'mdo', 'MD07G1108500' => 'mdo', 'MD07G1108600' => 'mdo', 'MD08G1120200' => 'mdo', 'MD09G1212400' => 'mdo', 'MD10G1254900' => 'mdo', 'MD15G1099400' => 'mdo', 'MD15G1242800' => 'mdo', 'MD17G1194400' => 'mdo', 'Medtr1g021280' => 'mtr', 'Medtr2g048360' => 'mtr', 'Medtr2g102050' => 'mtr', 'Medtr3g109450' => 'mtr', 'Medtr4g012430' => 'mtr', 'Medtr5g022530' => 'mtr', 'Medtr7g081705' => 'mtr', 'Medtr8g006850' => 'mtr', 'MELO3C002796.2' => 'cme', 'MELO3C007924.2' => 'cme', 'MELO3C012960.2' => 'cme', 'MELO3C012961.2' => 'cme', 'MELO3C021879.2' => 'cme', 'MELO3C022278.2' => 'cme', 'MELO3C024234.2' => 'cme', 'MELO3C027944.2' => 'cme', 'Migut.B01537' => 'egut', 'Migut.E01512' => 'egut', 'Migut.H02177' => 'egut', 'Migut.I00871' => 'egut', 'Migut.M01882' => 'egut', 'Migut.N01737' => 'egut', 'MSTRG.14011' => 'ama', 'MSTRG.14012' => 'ama', 'MSTRG.15580' => 'ama', 'MSTRG.20692' => 'ama', 'MSTRG.22687' => 'ama', 'MSTRG.23398' => 'ama', 'MSTRG.7530' => 'ama', 'Nitab4.5_0000250g0210' => 'nta', 'Nitab4.5_0000671g0140' => 'nta', 'Nitab4.5_0000920g0140' => 'nta', 'Nitab4.5_0002393g0100' => 'nta', 'Nitab4.5_0003187g0060' => 'nta', 'Nitab4.5_0005851g0040' => 'nta', 'Nitab4.5_0013736g0010' => 'nta', 'Nitab4.5_0022827g0010' => 'nta', 'Nn1g00855' => 'nnu', 'Nn2g11759' => 'nnu', 'Nn3g20259' => 'nnu', 'Nn4g26655' => 'nnu', 'Nn5g30763' => 'nnu', 'Nn6g32006' => 'nnu', 'Nn6g33830' => 'nnu', 'Nn7g37013' => 'nnu', 'Nn8g39206' => 'nnu', 'Oeu001716.1' => 'oeu', 'Oeu007176.1' => 'oeu', 'Oeu008283.2' => 'oeu', 'Oeu012173.1' => 'oeu', 'Oeu014558.1' => 'oeu', 'Oeu014559.1' => 'oeu', 'Oeu015190.1' => 'oeu', 'Oeu020084.1' => 'oeu', 'Oeu024168.1' => 'oeu', 'Oeu024169.1' => 'oeu', 'Oeu028157.1' => 'oeu', 'Oeu029625.1' => 'oeu', 'Oeu030672.1' => 'oeu', 'Oeu031569.1' => 'oeu', 'Oeu041096.3' => 'oeu', 'Os01g0500500' => 'osa', 'Os01g0585600' => 'osa', 'Os02g0654600' => 'osa', 'Os05g0394200' => 'osa', 'Os05g0547200' => 'osa', 'Os07g0211900' => 'osa', 'Os09g0538700' => 'osa', 'Os10g0562700' => 'osa', 'Peaxi162Scf00015g10043' => 'pax', 'Peaxi162Scf00105g00511' => 'pax', 'Peaxi162Scf00328g00619' => 'pax', 'Peaxi162Scf00475g00517' => 'pax', 'PGR004G0558' => 'pgr', 'PGR031G3646' => 'pgr', 'PGR044G0039' => 'pgr', 'PGR102G0494' => 'pgr', 'PGSC0003DMG400003581' => 'stu', 'PGSC0003DMG400014507' => 'stu', 'PGSC0003DMG400025994' => 'stu', 'Phvul.002G106900' => 'pvu', 'Phvul.005G170800' => 'pvu', 'Phvul.008G046800' => 'pvu', 'Phvul.009G105100' => 'pvu', 'Phvul.009G217000' => 'pvu', 'Phvul.010G050100' => 'pvu', 'Potri.001G181100' => 'ptr', 'Potri.002G137600' => 'ptr', 'Potri.003G054800' => 'ptr', 'Potri.005G112300' => 'ptr', 'Potri.006G244100' => 'ptr', 'Potri.007G056700' => 'ptr', 'Potri.014G047400' => 'ptr', 'Potri.018G036400' => 'ptr', 'Pp3c16_15000' => 'ppa', 'Pp3c27_2840' => 'ppa', 'Pp3c4_15800' => 'ppa', 'Pp3c5_16610' => 'ppa', 'Pp3c5_5830' => 'ppa', 'Pp3c6_26190' => 'ppa', 'Prupe.1G454100' => 'ppe', 'Prupe.2G131300' => 'ppe', 'Prupe.3G070400' => 'ppe', 'Prupe.4G088700' => 'ppe', 'Prupe.7G171300' => 'ppe', 'Psat0s1478g0320' => 'psa', 'Psat1g019280' => 'psa', 'Psat2g153320' => 'psa', 'Psat3g098920' => 'psa', 'Psat4g224960' => 'psa', 'Psat5g298760' => 'psa', 'Psat7g251360' => 'psa', 'PSO063G1146' => 'pso', 'PSO210G1523' => 'pso', 'PSO210G6544' => 'pso', 'PSO293G0003' => 'pso', 'PSO675G0382' => 'pso', 'PSO675G0886' => 'pso', 'PSO675G4099' => 'pso', 'PSO675G5646' => 'pso', 'PSO732G0390' => 'pso', 'PSO782G3994' => 'pso', 'QL04p030348' => 'qlo', 'QL04p053042' => 'qlo', 'QL05p023392' => 'qlo', 'QL05p053710' => 'qlo', 'QL06p051059' => 'qlo', 'QL12p026148' => 'qlo', 'RcHm_v2.0_Chr1g0347891' => 'rch', 'RcHm_v2.0_Chr1g0367931' => 'rch', 'RcHm_v2.0_Chr2g0099091' => 'rch', 'RcHm_v2.0_Chr2g0138001' => 'rch', 'RcHm_v2.0_Chr5g0015541' => 'rch', 'RcHm_v2.0_Chr6g0305621' => 'rch', 'Rhsim01G0140100' => 'rsi', 'Rhsim02G0183700' => 'rsi', 'Rhsim07G0035800' => 'rsi', 'Rhsim07G0193600' => 'rsi', 'Rhsim08G0032200' => 'rsi', 'Rhsim08G0221900' => 'rsi', 'Rhsim12G0198600' => 'rsi', 'Sabra01G0145900' => 'sbr', 'Sabra05G0092200' => 'sbr', 'Sabra06G0191000' => 'sbr', 'Sabra07G0048600' => 'sbr', 'Sabra14G0034400' => 'sbr', 'Sabra18G0037000' => 'sbr', 'SalBow2G2253' => 'sbo', 'SalBow3G3267' => 'sbo', 'SalBow3G3960' => 'sbo', 'SalBow5G2839' => 'sbo', 'SalBow5G2909' => 'sbo', 'SalBow5G3905' => 'sbo', 'SalBow8G4714' => 'sbo', 'SalBow8G5422' => 'sbo', 'Sc02g0003090' => 'sci', 'Sc06g0000700' => 'sci', 'Sc16g0001990' => 'sci', 'Sc21g0005140' => 'sci', 'Sc24g0001510' => 'sci', 'Sed0000737' => 'sed', 'Sed0001049' => 'sed', 'Sed0002445' => 'sed', 'Sed0002852' => 'sed', 'Sed0014242' => 'sed', 'Sed0015107' => 'sed', 'Sed0021263' => 'sed', 'SEGI_02497' => 'sgi', 'SEGI_13742' => 'sgi', 'SEGI_18398' => 'sgi', 'SEGI_37967' => 'sgi', 'SGA_v2.0_scaffold116G32291' => 'sas', 'SGA_v2.0_scaffold153G36903' => 'sas', 'SGA_v2.0_scaffold163G38084' => 'sas', 'SGA_v2.0_scaffold223G42850' => 'sas', 'SGA_v2.0_scaffold2G00967' => 'sas', 'SGA_v2.0_scaffold52G19225' => 'sas', 'SGA_v2.0_scaffold5G02582' => 'sas', 'SHI10941' => 'shi', 'SHI13617' => 'shi', 'SHI24875' => 'shi', 'SHI24876' => 'shi', 'SHI24877' => 'shi', 'SHI45632' => 'shi', 'SMO118G0379' => 'smo', 'SMO307G0007' => 'smo', 'SMO307G0037' => 'smo', 'SMO358G0405' => 'smo', 'SMO367G0790' => 'smo', 'SMO367G0858' => 'smo', 'Solyc01g090270.4' => 'sly', 'Solyc02g083610.4' => 'sly', 'Solyc03g120140.3' => 'sly', 'Solyc08g068100.3' => 'sly', 'Sopen01g036060' => 'spe', 'Sopen02g028390' => 'spe', 'Sopen03g039010' => 'spe', 'Sopen08g021980' => 'spe', 'Sp1g00160' => 'spa', 'Sp1g38900' => 'spa', 'Sp2g21940' => 'spa', 'Sp4g16950' => 'spa', 'Sp4g26930' => 'spa', 'Sp5g02910' => 'spa', 'Sp5g10930' => 'spa', 'TAR376G0771' => 'tar', 'TAR383G0491' => 'tar', 'TAR624G0240' => 'tar', 'TAR626G0133' => 'tar', 'TAR628G1292' => 'tar', 'TAR629G1362' => 'tar', 'THA.LOC104798610' => 'tha', 'THA.LOC104799211' => 'tha', 'THA.LOC104802494' => 'tha', 'THA.LOC104814319' => 'tha', 'THA.LOC104817191' => 'tha', 'THA.LOC104817994' => 'tha', 'THA.LOC104821337' => 'tha', 'THA.LOC109116899' => 'tha', 'Thecc.01G015000' => 'tca', 'Thecc.01G394700' => 'tca', 'Thecc.02G011700' => 'tca', 'Thecc.06G089200' => 'tca', 'Thecc.09G038400' => 'tca', 'Thhalv10001315m.g' => 'esa', 'Thhalv10003682m.g' => 'esa', 'Thhalv10005793m.g' => 'esa', 'Thhalv10006946m.g' => 'esa', 'Thhalv10010132m.g' => 'esa', 'Thhalv10011250m.g' => 'esa', 'Thhalv10016345m.g' => 'esa', 'TPR.G10527' => 'tpr', 'TPR.G1386' => 'tpr', 'TPR.G14111' => 'tpr', 'TPR.G18741' => 'tpr', 'TPR.G22572' => 'tpr', 'TPR.G24165' => 'tpr', 'TPR.G33133' => 'tpr', 'TPR.G34770' => 'tpr', 'TPR.G37142' => 'tpr', 'TWI09G0387' => 'twi', 'TWI09G1447' => 'twi', 'TWI12G1055' => 'twi', 'TWI14G1028' => 'twi', 'TWI18G0444' => 'twi', 'TWI32G0499' => 'twi', 'TWI59G1205' => 'twi', 'TWI63G1384' => 'twi', 'unitig_37.g12919' => 'ugi', 'unitig_46.g18214' => 'ugi', 'unitig_46.g18215' => 'ugi', 'unitig_578.g16710' => 'ugi', 'unitig_578.g16711' => 'ugi', 'unitig_61.g26430' => 'ugi', 'unitig_61.g26431' => 'ugi', 'unitig_62.g23604' => 'ugi', 'unitig_699.g19704' => 'ugi', 'unitig_748.g7676' => 'ugi', 'unitig_8.g3851' => 'ugi', 'vmacro13495' => 'vma', 'vmacro16954' => 'vma', 'vmacro18425' => 'vma', 'vmacro18904' => 'vma', 'vmacro21058' => 'vma', 'VMungo0251G0112' => 'vmu', 'VMungo0251G2447' => 'vmu', 'VMungo0251G2901' => 'vmu', 'VMungo0331G1446' => 'vmu', 'VMungo0331G1629' => 'vmu', 'VMungo1080G1243' => 'vmu', 'VMungo1215G2524' => 'vmu', 'VMungo1309G0379' => 'vmu', 'VMungo1309G1432' => 'vmu', 'VMungo1309G2353' => 'vmu', 'VMungo1383G0257' => 'vmu', 'Zm00001eb023690' => 'zma', 'Zm00001eb132150' => 'zma', 'Zm00001eb160590' => 'zma', 'Zm00001eb186340' => 'zma', 'Zm00001eb249280' => 'zma', 'Zm00001eb303290' => 'zma', 'Zm00001eb332010' => 'zma', 'Zm00001eb350970' => 'zma', 'Zm00001eb357310' => 'zma', 'Zm00001eb390970' => 'zma' ) $gf_id = 'HOM05D000818' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000818' ) $data_identifier = 'HOM05D000818' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'ach' => (int) 15, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 9, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 4, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 7, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 13, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 11, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 12, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 8, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 6, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 6, 'smo' => (int) 6, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb390970' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1